Scaffold Ga0210382_10000916

Overview

Basic Information

• Taxon OID: 3300021080
• Scaffold ID: Ga0210382_10000916
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9893
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000531	Metagenome / Metatranscriptome	1046	Y
F002984	Metagenome / Metatranscriptome	515	Y
F045028	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210382_100009162	F000531	GGA	LSTVKSGNRANKGPAAEQLAILLSLFSPWDGISLTYRQFAAELGAPVTEAAVKKWPQRNKFPADVARLIVTKARDRGLVGVTLEWVMWAEGPKPHRAPKGTHNRSRQPAALTEAGHQEPVGRLGAGIAEALRADLSHNEFGQWSSVEVQHTVIWALKDLARRLRVLRFDMGKTFDLTDQWARKTGLPVRPSEGSPAP
Ga0210382_100009166	F002984	AGGA	MHSENRMSVRRSLIPFTLLAGAIAALSCGDPSPVGVDLQAPAFQKGGRWDTPLPTGSGLVPCSQGYDSVTQVIGPAGGLIAVGSHFLWVDSMALSDPVSITAVAPAGTARWVRFRPDGLRFRTNGAGWSALLYTSFRDCGLPLADTLRIAQVTDSLNVIRYLAPPDSTWIRVRKKAWSRGNQFVAGVLHHFSQYAVAW
Ga0210382_100009167	F045028	AGGA	MTSNRIFVRRWLIPLALLASSCSDPSPVGVGPETPGLLAGRVKSSGTSLVQCARVARDSVTQVIGPAGGWFVVGANVLWVDSLALSAPVKITAVAPSDTVRRVRLRPDGLVFKTGTHGLGAVVATNLENCKLRHNEVPRIANVTDALSVVEYLESPTAAVDSLLVMRFRVDTGGWTPYWAFGALRHFSNYAVAW