NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210382_10000916

Scaffold Ga0210382_10000916


Overview

Basic Information
Taxon OID3300021080 Open in IMG/M
Scaffold IDGa0210382_10000916 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9893
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000531Metagenome / Metatranscriptome1046Y
F002984Metagenome / Metatranscriptome515Y
F045028Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0210382_100009162F000531GGALSTVKSGNRANKGPAAEQLAILLSLFSPWDGISLTYRQFAAELGAPVTEAAVKKWPQRNKFPADVARLIVTKARDRGLVGVTLEWVMWAEGPKPHRAPKGTHNRSRQPAALTEAGHQEPVGRLGAGIAEALRADLSHNEFGQWSSVEVQHTVIWALKDLARRLRVLRFDMGKTFDLTDQWARKTGLPVRPSEGSPAP
Ga0210382_100009166F002984AGGAMHSENRMSVRRSLIPFTLLAGAIAALSCGDPSPVGVDLQAPAFQKGGRWDTPLPTGSGLVPCSQGYDSVTQVIGPAGGLIAVGSHFLWVDSMALSDPVSITAVAPAGTARWVRFRPDGLRFRTNGAGWSALLYTSFRDCGLPLADTLRIAQVTDSLNVIRYLAPPDSTWIRVRKKAWSRGNQFVAGVLHHFSQYAVAW
Ga0210382_100009167F045028AGGAMTSNRIFVRRWLIPLALLASSCSDPSPVGVGPETPGLLAGRVKSSGTSLVQCARVARDSVTQVIGPAGGWFVVGANVLWVDSLALSAPVKITAVAPSDTVRRVRLRPDGLVFKTGTHGLGAVVATNLENCKLRHNEVPRIANVTDALSVVEYLESPTAAVDSLLVMRFRVDTGGWTPYWAFGALRHFSNYAVAW

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