Scaffold Ga0210381_10370577

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0210381_10370577

Scaffold Ga0210381_10370577

Overview

Basic Information
Taxon OID	3300021078 Open in IMG/M
Scaffold ID	Ga0210381_10370577 Open in IMG/M
Source Dataset Name	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	526
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9197	Long. (^o)	-106.9492	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003271	Metagenome	496	Y
F054650	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210381_103705772	F003271	GGGGG	MTAAFLDFLGWEQLTAAEQASAMGGACPGLTAWLAARVVLGGRRQR
Ga0210381_103705773	F054650	GGAGG	MILAAWLLSLPFRLLAALGLRRSVILACLFVLAVTAYGVAEDLGLVDPPAHAAPAPKPAVRQPRPSRAAIADI

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.