Scaffold Ga0194044_10026689

Overview

Basic Information

• Taxon OID: 3300021074
• Scaffold ID: Ga0194044_10026689
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L442-17m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2459
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.775
  • Long. (^o): -93.818

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050854	Metagenome	144	N
F098524	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194044_100266892	F050854	AGAAG	MVSASEKLPQRARNQQKSFMDDLLTLAIGKLADHYQVSEDYLRRALLLRAVAELNAVTDRSKPATPEQLEVILTNLNRQLNEVLEGFRRQIVEADNAAQSAHIAIAVVERVAGVLRGQTAGPPLPSAGSR
Ga0194044_100266893	F098524	GGAG	VTHHLETPYNGDMDTGDDDEKQFEKTLLEAGKPDAGATIEASVKESPSRSATAPEDGSTEEESDAEGPGFDPIQTMLNRRYPRLALHRDTLRLLQRVEWMHRNQGVNDFCNDAIRYVILAREAGTTSFNDLQAVSAAIDARLDELSVILLRLHQAAGDLSIIVEHQKLIGAYGERLRKAATTGA