Scaffold Ga0210378_10019141

Overview

Basic Information

• Taxon OID: 3300021073
• Scaffold ID: Ga0210378_10019141
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2777
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9197
  • Long. (^o): -106.9492

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088582	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210378_100191412	F088582	GAG	MTGWQDSWTFRIVDQDTGAAVPGVPVSVLESGGRAGGYWVSDSDGLVRIPKHDQPRLRLRVGLRNEEAIELDARSLPDDPIPLTAPRDIAVAATMASAAPADSLLHAVTAAQSQSGHVMRFARIGVLPKDRDITAAKSPDDMSVRYGLLIEIELVWQSLGAEAGATLYSISLGPGEEVKVAVADGRWRKSPDARERPLQIVAKMVGARQIGDGMDAMPLDVCVAADLPSAAADTIKLLAERTTRTCEALRRRALGVTELDGEKPAGTPVRTLRNMRSEGVLTYHFVEPIERHRVIVRTPRFRPALLVPFRLPNIATREVVRRFGHAIRRNLLDRRLGADVDQVLGPDPVPAAAEQRVYEHIAAHLPYYSATIIAAADPAERFFALAKLRDPRGHPLTD