NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194056_10022479

Scaffold Ga0194056_10022479


Overview

Basic Information
Taxon OID3300021070 Open in IMG/M
Scaffold IDGa0194056_10022479 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L442-13m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2536
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.775Long. (o)-93.818Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045016Metagenome153N
F045053Metagenome / Metatranscriptome153N
F052500Metagenome142N
F091215Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0194056_100224791F091215AGGMRPTADETIRFYREGGAYVLVHDGTLDGGANLHYIIRLIEQEMRLKLKSLGYFGQCTHSQERFRSGQPIDEHAFARRTRQLLRLPLAELAACLMAKGVLGPKPGEPAFGDLDEKTGAAALKEWALSYYEANEITCPGSRNTLESNRLFRWRQLPFEYLRHNLQGSYEIPVKVECYRQLLGKGHPLPPLICRRRGWDLLEGYHRLSAH
Ga0194056_100224792F045053N/AMTTVASYHIPGFGTVDVVQQNDGRNRFWDLFAASGECLNEGHPFGSKPRRKQVETFLAHDLKKALARIEKECERLKITQEDLDEVIHEAAQAGNRRLNQVSEEKQQERLITTAEEQAARVNNGGRTSQLIYLLEAYGEAGAVKALQDRHETNG
Ga0194056_100224794F052500N/AMTTQAQRHRASEIAGEITKLQGIKSAVVDDDNGYGSFNLFIELRNRLEGHHYLSRRIEFEIPLHGLMARITRIIERHGARLEWHEPPRRQYARPGHGKKLFEGYSTDSYKVSVHIPQPTEEVQRQQETQLAFA
Ga0194056_100224795F045016N/AMGKRPTRGNVRRGAGVGKKDAMTLAIAQPPGVTGASLVNAACRKYQEAVDKFKRVEAEWQTLPTQEAVMLVVETQGILRETRQLLDQGTSQMTGMNSPEWGEATGQNTRDEVAECLQDAHDLGNRVDDLLAGCDRLIEICLAHQEAYERYQTGKALGIVLAGAILTIGVALYFLLR
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