Scaffold Ga0206684

Basic Information
Taxon OID	3300021068 Open in IMG/M
Scaffold ID	Ga0206684_1020624 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021068 Open in IMG/M

Scaffold ID

Ga0206684_1020624 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2353
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2353

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.6907	Long. (^o)	-122.3448	Alt. (m)	Depth (m)	100
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.6907

Long. (^o)

-122.3448

Alt. (m)

Depth (m)

100

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000659	Metagenome / Metatranscriptome	952	Y
F001930	Metagenome	615	Y
F012510	Metagenome	280	Y
F019911	Metagenome	227	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206684_10206241	F019911	GGA	MKTFKGYLKEAAPAWTESLSAMIFDLPRAGLVDVKIPLSPSIFKRIWPKSVRSRVFHLTNDVGLRALKKMEGGKRSISAFYNITTSEISYGIQTEGGYVVEMDADVLAAAPDDIGTQPDKTGRRWLVLDTLTTTMGGASKLRGMEKDIESMMWKIINTHSDYPKSMAEMSINAAWIELKDEREYYKKVMGLIIKDYIDGMEKVMKRYSKPLKSIFTDYAFNKELVPDPDSGDLALWDEIVVNNFKVKKVHVSAEYSPDFEGDDDPLTNSDFGWNVPFELYHDDGDMADYIARTRN
Ga0206684_10206242	F000659	AGGA	MKSFKGYLKEVNSKYIVAKNPSDKKWYAMGHVGSNKWMPVSSGFKSKAQAQKWAKSQDKVDTAARGEMGGV
Ga0206684_10206243	F001930	AGGTGG	VEKWVVYKMKTFKGYLKEDAPAWQSSTSQKIFDFQQIQYMQIPLTSSTMEWIFQVQLPRATVFHVTNGIGLDKLKRLQNKKKSISAFFNMDASTMEHGIQGGGGLVVELDANIIMSGKGDLMSMPDKTGRRWVELMNIDPKKTTHKELEQLLIDLAIKHDPKTKELIEIEPDIGLGAWWHLRMNFKDDKKKMSLIIADYIDGVNAILKKHKKDIQGAVHGYYVRRGAVAVKHPSGRMVGGDSKIKEWNVYDEQIVDKIKIIKVHTFNTTTRETDWIAKSVIPRLGKIPLRHWVGGATELSTYVSQVAEAEVRSIGRSKP
Ga0206684_10206244	F012510	GGAG	MRTFKEHLNEVYKDYPGKGWLMDGPDIKPKDIIWRSKVHHWDDTVRSDNTRFIITKTGKGKDKFQMWAMSDKSGEVLFHFGDKPTLDAAKEFASI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206684_1020624

Overview

Ecosystem & Geography

Associated Families

Sequences