NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206684_1007037

Scaffold Ga0206684_1007037


Overview

Basic Information
Taxon OID3300021068 Open in IMG/M
Scaffold IDGa0206684_1007037 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4099
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F002715Metagenome / Metatranscriptome535Y
F016590Metagenome246Y
F078839Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0206684_10070372F002715AGGAMAEEGLQDVKLEVGLLKSEVETRGKQVEVLLQKLDLTTDKLQQLTVQIIKLNTRQEDHFKHDTTVRDELKILHQRIGDLHDKNLVMQKEIEQRLDRLDQYKSKLMGMIIVVGGALGLTVALATHFL
Ga0206684_10070373F000245AGGAMKTFSRLKEGRLDDKMDKAVSDEIKKRKLARFPVNATDDYKMKNKKNLAFKFPTPSGEMMFHVYLRPMAPTKGQPKGVMAFNYDIEDK
Ga0206684_10070374F016590GAGMKSFVQHLKEFAIKSTSDLAFDVGSQGLGSSGLMIPISGPMFKRIWPETIRATVFHVTDHNGLGKLKRLEGGKKSISAFFSMMSRYMETGVATSGGAVVEMDADLLVSARDDIMSQVDKGGRRWVEMSWFENQTRDRSAFAAVNRELNVLIRNLVLKHLEPILGNKARTEPEFYLWADMKRHLKDSKKLSLVIKDYFDGVESIIKKNSEVMGSIFYGYARSKRMTDNSWDEQIVNNIKVKKVHLIKPSQSKVDTANPDRTHPIDSYEFAKEKAEKLFGTVKEWDVAIDLEIYTREVVKKEQPPRNIAY
Ga0206684_10070376F078839AGGMTEDEKLVSKLVFMSFLCLWFIVLFTFGLLVYQTSSNQNRVDVLIKENTRITSLWLEKK
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Bioinformatics & Integrated Biology Lab
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Biomedical Sciences Research Center "Alexander Fleming"
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