Scaffold Ga0206684_1004834

Overview

Basic Information

• Taxon OID: 3300021068
• Scaffold ID: Ga0206684_1004834
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4924
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008085	Metagenome / Metatranscriptome	339	Y
F022672	Metagenome	213	Y
F050657	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206684_10048342	F050657	GAGG	MPKKSEFFKEGNKSDTDLRTTLNDPYFETGEEPYKECSNPNDPDDKSLCIVIQDGSPFDGAVIRYTSFKLVEQDLTGDDIACQYEYDIEVPPHDLGYEITEEDGKEFEKRLGEWIIEIIQTQMDKHAAADRDNNIKEPIT
Ga0206684_10048344	F022672	N/A	MTIENREYGSWITVELQSLLDAHIFNRDHFAETFTDRADLNKEIQLIKNEIIRREKRE
Ga0206684_10048345	F008085	GAGG	MAGSIMVRYAQKTYKQRKVDSAEKENSAVYKNLTHSVDIIPESMSYMTFSTQKEASKFAERMRDKGYHIIEIKDDYRKS