NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0206684_1001719

Scaffold Ga0206684_1001719


Overview

Basic Information
Taxon OID3300021068 Open in IMG/M
Scaffold IDGa0206684_1001719 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8189
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)100
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F050996Metagenome144Y
F065685Metagenome / Metatranscriptome127Y
F076077Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0206684_10017191F050996GGAGGMKRPTKKAFYEYMSKRFSLKYKSNDGYNALLDVIQAADRSEESFMDLAELTLMTKADRLIYRNAMAEGGTEMTPAQVDQYLAIVEYGLEYVS
Ga0206684_100171912F000325GGAGMKTAKGNDKLGKENCIVVSRPVGDTCPPTCDFLGNGCYAEQLEKIYPGVRPAGMQNLITEKNKIRAMLINAEKKGNDLRWHERGDFFKDGSMLDIEYVDNILWACRSILAEGGKLPKMWAYTHIYDPKLSRILGKYITMYASVHNEDDVAVAKKAGFTLFAWCDSDQKIATKRPRSKKKADQWRSDLPKLVVIGEDKYITCPEIRRGRGVVTCTKTKNSVNCQLCVQGFANVLFPSH
Ga0206684_100171916F076077AGGAGMFTEQEKLEITIEGIQNGDVFMVDGVACDQCGDPIFEDDA
Ga0206684_10017198F065685GAGMKPVIGIGSNTKYGRVLKILKDSVVVENGRGEKDKVSFRRIESTLKGKV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.