Scaffold Ga0206684_1000001

Overview

Basic Information

• Taxon OID: 3300021068
• Scaffold ID: Ga0206684_1000001
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 170818
• Total Scaffold Genes: 239
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 167 (69.87%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006294	Metagenome / Metatranscriptome	377	Y
F011767	Metagenome / Metatranscriptome	287	Y
F019562	Metagenome / Metatranscriptome	229	N
F023949	Metagenome / Metatranscriptome	208	Y
F025308	Metagenome	202	N
F038721	Metagenome / Metatranscriptome	165	N
F053345	Metagenome	141	Y
F061913	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206684_1000001154	F053345	N/A	MITTDQMIAQALANMQRLNDQIELNLNILSNLDRMHSESHGGSMNLHDQVSHIQNGYDTLNNGLRSARGVHGYDEIVNQDPARIS
Ga0206684_1000001186	F019562	AGG	MWYHRKFKLRYDANVFNDIIEYAKTAEWKQGYDQNGLIWNIEELPLKPEQFPILNELYEGLNAEFKRPSFFLSNVKPGGLVNHIDHNKWGNLGIPILGDFKNTPQYFYDQFNHPVESFINDSPVIFNTRMLHAVPRELDDTGPRWILMMDLFDWVDKLFAKVDNKTIWTDTKNFNA
Ga0206684_1000001188	F061913	GGA	MLIEQGKFYVKCHNIYYNQQWLVDVLDSLSPKDWVDGVSTTGVAWTVSECRTIPYEGMWKDIVENINLDTVGSSERGLEDKKPWCFFSKLPPGGINLHYDHRRWGAILFPVRGKFELTPQIFATENYTEIERFNFEKSKIHNNGTPVFFDSRVLHAVPTPIDDEEERVVFSVNIHSHPTEMYKKAIDGTWLNKNTENIGVSND
Ga0206684_10000012	F011767	GGAG	MEAIIQRIGKFHSKVFGTLARKAKTSKFWAILLTLAVLYEIVEHIVWPILVPYLIYMQWFNNG
Ga0206684_1000001205	F038721	AGGA	MAYIGNNVTQTAVDTTDQRFDEFKATSIDASAVQTIFLGGDETAVSGSPEDAFGVSLNNVSADCNHKTYRRIDMGNVVAVVGVVDFGYVASS
Ga0206684_1000001215	F023949	AGGAG	MTKDDTKKFVNSLEKGDNKQAGTDIKNALADKVSGALDDAKVDVAKSVFTGQQGVETPEANPFTGNDTAAEAPAPEVPSDEVAK
Ga0206684_1000001229	F025308	GGA	MISDGDFKFLLDKSQGSTKILEIGTGTGKSTAALRLNAEVYTIDKNDMFDYNVDCYRFITESKVYWQSYTHYDFDFVFIDGSITKLDCEQILKRTKDSFKIVFHDYLPNEDKDPGKNKGYYNMKVFKETALLSYAMVEELGGTHCAIIALKKDK
Ga0206684_100000197	F006294	AGG	MSDDGQLEFDFGLESKIPDNVILFPKIPLRRPNWAQQKLDAKKQDMLRRQHNQVYVQAITEQLTEQMLLRLREENINITTKEFLSDYKLSLEALKSMLLRAVHMKHPLQQRVDRAVKCKQGEGKDVYAITIDYNKF