Scaffold Ga0196978_1000017

Overview

Basic Information

• Taxon OID: 3300021067
• Scaffold ID: Ga0196978_1000017
• Source Dataset Name: Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20-13C
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 145190
• Total Scaffold Genes: 135
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 96 (71.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.305
  • Long. (^o): -116.2547
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040840	Metagenome / Metatranscriptome	161	Y
F055604	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196978_100001783	F040840	AGGAGG	LSSKTENLIPVRISRVNGTAGTQTDGADHPRKSFVEPEVSFPVDVLEATTFFQSTESGVTLP
Ga0196978_100001784	F040840	AGGTGG	LNKNENLIPVQLPEVKEAVETAQEAPAAGRRPFVEPEVSFPVDVLEATTFFQSTESGATN
Ga0196978_100001792	F055604	AGG	LYVRLLAASLFAAWLVGKFVLGKGGFVHILLLCAVAVAVVQLVHERRAARG