Scaffold Ga0206686_1041526

Overview

Basic Information

• Taxon OID: 3300021065
• Scaffold ID: Ga0206686_1041526
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 500m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1375
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010477	Metagenome / Metatranscriptome	303	Y
F010791	Metagenome / Metatranscriptome	299	N
F017222	Metagenome	242	Y
F069325	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206686_10415262	F069325	AGGA	MRENGMSVCSNCYKSQISIKHDVGHWWNNPPDHVYVCSDKCYKELEQHVKNKTWMLHRPAAMFGESKKVTKGLTALTDKQFGVE
Ga0206686_10415263	F010477	N/A	MIIQLQIRYLVFIPYLIFVGMMGGNILAEAIVIGLVLGMYDFLFDGGGGGRPA
Ga0206686_10415264	F010791	GAG	MSFEFRAGRKRVVKSVETVKEANELMRSMIAIRNENSLWENIDVKTGHLRAVDELEKLVGTIFDVFDTMSIYMNGKSVRRIWSRGF
Ga0206686_10415265	F017222	GAGG	MEIKIHARNIDDKLRIALYAMTEFAMARLVPSKRLRNNVSINVHLKHHEEGGEAMLSEDADRYRPRDFKVIIDHHQAEIDDYGRTRTDTEWGHTILRTLAHELVHVKQYLVGDLT