Scaffold Ga0206686_1004195

Overview

Basic Information

• Taxon OID: 3300021065
• Scaffold ID: Ga0206686_1004195
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 500m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4046
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004630	Metagenome / Metatranscriptome	430	Y
F011529	Metagenome / Metatranscriptome	290	Y
F035723	Metagenome	171	Y
F076496	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206686_10041952	F076496	GGAG	MAKSKYSKEIQDWIDAGGIVKVISPEQTARTLRRQSGGYFKGKSVMGPSKKKGKSS
Ga0206686_10041953	F011529	GGA	MSWQKWSKRKTIYNLEGIRLRSCRLWLDENGFHPFLDQDELTRPDLQKSMGCTYDELPKEAWDMMDKYDSDVARKSKYAT
Ga0206686_10041955	F035723	AGGAG	MVNLVTNKAEETAHLRGKSKFYVAGWVANRECENPQKMPEECKGDIVVERWHEEYLTGYGDSVANGECLMAE
Ga0206686_10041959	F004630	GGAG	MNNTKLISEYYHPDGGVAKIYRVMTAMDGDHSFFSITYKDTNGVRIGTEDFPYKSLRYVEDAAENWTLGIKQLLTE