Scaffold Ga0206227_1048392

Overview

Basic Information

• Taxon OID: 3300021063
• Scaffold ID: Ga0206227_1048392
• Source Dataset Name: Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos D4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 773
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.96
  • Long. (^o): -106.99
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044805	Metagenome	154	Y
F082441	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206227_10483921	F082441	N/A	TGAAEVTLGPDLKIPPHYRAGKRCEPGRGYGFTAEAPNHPSTYPKMNLRVFNGEVIGFIFELEAKEGWKPWYDQPEAKATSHDGSSPHYTQTIYIKKGPTAEECKASNGPYGNK
Ga0206227_10483922	F044805	AGGAGG	MFMYFKTVGFSFLSFLIVSSGAAHADETGKEHGHKTPHGGIVRETEGMRVEFLIDKSGQPKLYLYDKTMKPLEKTDLQTKLTVKAHDGAQHSRELKASKDPKEGVVYKGEPIKGVSDWDTAVVSVKFKDSWTHI