Scaffold Ga0182232_1007779

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182232_1007779

Scaffold Ga0182232_1007779

Overview

Basic Information
Taxon OID	3300021060 Open in IMG/M
Scaffold ID	Ga0182232_1007779 Open in IMG/M
Source Dataset Name	Phyllosphere microbial comminities from miscanthus, Michigan, USA - G6R3_NF_07NOV2016_LD2 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1922
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	42.39	Long. (^o)	-85.37	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015215	Metagenome	256	Y
F045463	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182232_10077792	F045463	AGG	MSNLISICLEMVLVSVQDGCTVCAKHTMAQKSFWTHLMVLQGDEAQVEARFGPFGDSANLETR
Ga0182232_10077793	F015215	GGA	MVLLGDEAQVKAHFGTFGDNANLDPDWCTVCGEHSIGSEIVLDAPDGTPR

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