NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0182232_1000403

Scaffold Ga0182232_1000403


Overview

Basic Information
Taxon OID3300021060 Open in IMG/M
Scaffold IDGa0182232_1000403 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from miscanthus, Michigan, USA - G6R3_NF_07NOV2016_LD2 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11080
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Malvoideae → Gossypium → Gossypium australe(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030775Metagenome184N
F047130Metagenome150N

Sequences

Protein IDFamilyRBSSequence
Ga0182232_10004033F047130GGAGLKTAANKIADKVNAQGETSEARLDAMDGRIDQAVIQGVHLGASLGLAAMTSQTNEDYSSQPVGFVGGRPDEVDDIDERLEAYDDHAAALAEITNPQSVLNKLFEE
Ga0182232_10004036F030775N/ALSLENQARLKEVIILLNKDTISLVQDADQIKDLLELIDQDIPSALKAPLESAAHLDDHFAMVRRATKNISSRAALQKDRSLKKLEIKDLHSHIQTTRNSLATLEPELRSMEDEKIRLEAQLAELNAKIQSHRAHIANLPKNIEATSLKIASTIKEDQQIKNKLSSIQSSEDEDQKVLDNVSRIRTEAIEAINHLLNQ

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.