Scaffold Ga0182232_1000403

Overview

Basic Information

• Taxon OID: 3300021060
• Scaffold ID: Ga0182232_1000403
• Source Dataset Name: Phyllosphere microbial comminities from miscanthus, Michigan, USA - G6R3_NF_07NOV2016_LD2 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11080
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Malvoideae → Gossypium → Gossypium australe (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030775	Metagenome	184	N
F047130	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182232_10004033	F047130	GGAG	LKTAANKIADKVNAQGETSEARLDAMDGRIDQAVIQGVHLGASLGLAAMTSQTNEDYSSQPVGFVGGRPDEVDDIDERLEAYDDHAAALAEITNPQSVLNKLFEE
Ga0182232_10004036	F030775	N/A	LSLENQARLKEVIILLNKDTISLVQDADQIKDLLELIDQDIPSALKAPLESAAHLDDHFAMVRRATKNISSRAALQKDRSLKKLEIKDLHSHIQTTRNSLATLEPELRSMEDEKIRLEAQLAELNAKIQSHRAHIANLPKNIEATSLKIASTIKEDQQIKNKLSSIQSSEDEDQKVLDNVSRIRTEAIEAINHLLNQ