Scaffold Ga0210242_101277

Overview

Basic Information

• Taxon OID: 3300021047
• Scaffold ID: Ga0210242_101277
• Source Dataset Name: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_16mM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19480
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F098631	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210242_1012771	F098631	GAG	MSIAWPVVGDALASQGSLVRVRPASDATTLSLLCSPLGVGRASTHAESEFLAHVTAVHGWVLDFDKEQGAWHVFLFCFLRDIFIPSEHMVVISCIPTSMTFGDLLLANRCGTLRSLVDDSDLEAERAALQVVALHSKLLQLQDEDSSSEFQCVTQVCRYRDFLCSLPADAWLQYVFKPDPSMLPSYLLS