Scaffold Ga0215015_11097553

Overview

Basic Information

• Taxon OID: 3300021046
• Scaffold ID: Ga0215015_11097553
• Source Dataset Name: Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Colorado
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4301
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us

Source Dataset Sampling Location

• Location Name: Huntingdon County, Pennsylvania, United States
• Coordinates
  • Lat. (^o): 40.6949
  • Long. (^o): -77.9199
  • Depth (m): .9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006617	Metagenome / Metatranscriptome	368	N
F008019	Metagenome	340	Y
F010240	Metagenome / Metatranscriptome	306	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0215015_110975532	F008019	GGA	LGVRKKIAVSIVLIIIVALAVWQFTSPQLLPPVGNKYSTSEPYSNRGNWTFPETIRYVKAYLTISISNVTFPRTGIGTDYSLVISDVNQTITNSIVKGLGVRVTGMNIQDSVDGSTSTWGNGNAVSDAAQATSIFFFKTSTNHMLRFTVTFQLYDLLPLGSIPDQTVTSSFNITQIVL
Ga0215015_110975533	F006617	GGA	LIFYRVTPALVVMRGEGRDEADNMVGAKPMLLWYVWIRLVDGAWHRLDEISKQLRLPSNAIEWAAKFLCDKGMAERGFEENEIRLSRGNARFEDAVRALSTGTKSSK
Ga0215015_110975535	F010240	N/A	LLHQKLLANSLREHLGIYVLASLSNAFLTVSQYLAVSAAVASYLPVDPDTSALIASYGRGPGIFLALFLNSLVFQGILAVLIVTLALSTIVKTGSRWAYTFSGVIISGFVGYWLGAKFLVILEWISTLQNNRVDSSTPYSGLFWLGLAASICYVLMILFLRRSYDRLGENPTVTRSQ