Scaffold Ga0215015

Basic Information
Taxon OID	3300021046 Open in IMG/M
Scaffold ID	Ga0215015_11079142 Open in IMG/M
Source Dataset Name	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Colorado
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021046 Open in IMG/M

Scaffold ID

Ga0215015_11079142 Open in IMG/M

Source Dataset Name

Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Colorado

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6452
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6452

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us

Source Dataset Sampling Location
Location Name	Huntingdon County, Pennsylvania, United States
Coordinates	Lat. (^o)	40.6949	Long. (^o)	-77.9199	Alt. (m)	Depth (m)	.9
Location on Map

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Source Dataset Sampling Location

Location Name

Huntingdon County, Pennsylvania, United States

Coordinates

Lat. (^o)

40.6949

Long. (^o)

-77.9199

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001571	Metagenome / Metatranscriptome	669	Y
F011479	Metagenome / Metatranscriptome	290	Y
F017116	Metagenome	242	Y
F020766	Metagenome / Metatranscriptome	222	Y
F034511	Metagenome	174	Y
F052525	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0215015_1107914210	F052525	N/A	LAPPKTPSDPRALKRKISSQILQLPGVSGIGVPKGRLTVYLEADSEDVRERVREVLKTVSPEADVVFLVTGKFSKQDHD
Ga0215015_110791423	F011479	AGG	MSATSFDDLVSQSVSETMSKILGETTWKSVNFFFDTKTAAREPEAFAALLDKVFGFTSKVLQKKIAETLLNKVGAVQPTNTLDFRQILRLAKAKFPRTTLPGPIG
Ga0215015_110791424	F017116	N/A	MASDPIIAMFETFNLVLILIAFAIFARLGFKGKSLGSFRFQLSIFLLIWVISEIPHIAESIGFLAATGYEDTGLYLHAASMAVFAIFVGWRSFRFLSYNPPAPITTVSLPTDTPKVLKS
Ga0215015_110791425	F020766	AGG	LDLVTGGIVLFTIMVAAGIIPLIMAIKLKVHSLKILSLLLGLFAVVHGFYHLAFGFQQELLADAVLEPISLILLIGLGAYYSKVAIP
Ga0215015_110791426	F001571	N/A	MTGSVLEKRIALIHRVIVPDKEYPKEYAVLVTDSRSIFIRLEKTRSSYWLRGKMKFGTALMTDVMPKTLEDYEQISLETLTAKNANFTVPHENVTSLVLRKEEPEFRAREFFVWLTMRRQGHRFQVYNFEISYRQNSIAETMIKFYMVPLGAYFKPRRQTQTRETILREYATDALGIFQKVLSTKIISS
Ga0215015_110791427	F034511	GAG	LANGVNGVKRRRRPAQKGVQAVFTEDASWKGRAQVALGLITIGVGTVTWAYSTKGLGGFGLGNLIPWDSSVSAILLPISIPLLIGGVGLCTYYLVMRRTWRARNRIESALYELEALFSQKNGAPGPSLDTGALPDVKAARKSRFGFLSKALSIALVEAVLLIIIYGGLVREYASNVNMQNWVQANFAPGSYLLNYNAVLVLTGLLGVLIFQLLPRKLQSKKLQP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0215015_11079142

Overview

Ecosystem & Geography

Associated Families

Sequences