Basic Information | |
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Taxon OID | 3300021046 Open in IMG/M |
Scaffold ID | Ga0215015_10596136 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Colorado |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9817 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us |
Source Dataset Sampling Location | ||||||||
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Location Name | Huntingdon County, Pennsylvania, United States | |||||||
Coordinates | Lat. (o) | 40.6949 | Long. (o) | -77.9199 | Alt. (m) | Depth (m) | .9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007303 | Metagenome / Metatranscriptome | 353 | Y |
F017464 | Metagenome / Metatranscriptome | 240 | N |
Protein ID | Family | RBS | Sequence |
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Ga0215015_105961361 | F007303 | N/A | GDHRDLHTAYRRQRQMCIRDSLEFQQTLKDLESQVRLLLKEAAANGPSERTRDLTGKVYDLAERARQIPLPEVRNQSTTNQSILEKLPKQFDDDFGKFKGLTTFVEQVRKQHYNATGHNIGRTYGSFGTNELSPGRHHGKSLISTLEIRCDACGNESPQSERRDYPIHVLLHDRGQWEVCTGQSDCECQSYEGKGVRIGVTLSPERMGKGKA |
Ga0215015_105961365 | F017464 | AGAAG | MTDVLKGSQVLQKTYTYIENVTKESRKALMEEFSQKHKGIAINSASDILRQSVLDWFPRRDPMLKLVLEKTSQGKPGDVRMDFRGETKSVHFKVHLHAVFAVTGQSPDSPSFLKEVSLLVDPREFSM |
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