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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021046 Open in IMG/M |
| Scaffold ID | Ga0215015_10583428 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Colorado |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2548 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Huntingdon County, Pennsylvania, United States | |||||||
| Coordinates | Lat. (o) | 40.6949 | Long. (o) | -77.9199 | Alt. (m) | Depth (m) | .9 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004003 | Metagenome | 457 | Y |
| F004186 | Metagenome | 449 | Y |
| F004349 | Metagenome / Metatranscriptome | 442 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0215015_105834283 | F004349 | AGG | MGPVRPRIGLVLATTALLTACGNSANTPAGPPSAQAILNKPDQANVKDAHFTLVAHLVSGGISFDATGDGIIVIKPAQASKFTMETTVSGQSLKFEEIIVGGKEYDLSPDNPRWTVKSSTTSNPSSFKGRNAVYLGEDVLEDGKAWHVKAIDDNGNPFEAWVRESDGYPLKYLSTSQGTTFTATFDRFNTGQTVAPPPPSDIQP |
| Ga0215015_105834284 | F004003 | GGA | VPALRRLIAVLLAAGLLAACGGPGTPLGPPSARDILSKPNHGNLKDAHFLVTGTFSNQGVTVNLNGDGELVYTAPGAGRFRFQTLVAGQTVSFEEISIGGSDYTFTQPGNGKWVSKTSTSPLGPASFSGASDFKYVGEENLAAGKSWHAKAKDKDGNAFDGWIRESDGYPLKYTLTQQSNALTLTFDKFNTGVKISAPPPSQVVRG |
| Ga0215015_105834285 | F004186 | N/A | VPTLGPAPSAKEVLAKPQQSNLKDAHFTVTGTITDNGVTLKLVGDGALVYKPKPEGRFQFQTTVGGQTVSIEEISLDGTNYGRTPSSPKWVATKSSSGIDPTAFAGASDQKYIGEENLPQGKAWHASAKDKGGNAFDAYIRESDGYPIKYVETQAGGQNITLTFDRYNAGETVSAPPPDQIQQG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |