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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021046 Open in IMG/M |
| Scaffold ID | Ga0215015_10466727 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Colorado |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5692 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (81.82%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Huntingdon County, Pennsylvania, United States | |||||||
| Coordinates | Lat. (o) | 40.6949 | Long. (o) | -77.9199 | Alt. (m) | Depth (m) | .9 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001681 | Metagenome / Metatranscriptome | 652 | Y |
| F001901 | Metagenome / Metatranscriptome | 620 | Y |
| F004205 | Metagenome / Metatranscriptome | 448 | Y |
| F006201 | Metagenome / Metatranscriptome | 379 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0215015_1046672710 | F001901 | GGAGG | MTRRKQPWGQQRGWIVPADGSPPQELPRHMVGHKLISWTGTMPEREPAEPVEYVASKDHYHRHVLNPEGVYVYVPEGRDAQSLPESIKNEIRRQLKGQL |
| Ga0215015_1046672711 | F001681 | N/A | ALIWGRLCGVGSMTTLRLQRDPDGFFLWLPDYAPWIVGRRSLGANPNDRAFFDPNAGDIVWSSRDGMKDYEMDEVAARHLVGELVEMPQFESEREVEDWFLERGFKVEWI |
| Ga0215015_104667274 | F004205 | GGAGG | MEARVTLQSQSFRLRERMEEAKISHGQEIRADLPNIRVLALAGGGEGQALFCTMGSIRVREILNRGDDRPLPTEVMLEGLGVSSSGTYDILNALVSSNGNLRLVVDDQTMVVPAAKGVGAAAASTAEV |
| Ga0215015_104667275 | F006201 | AGGAGG | MNPQEKTSLTTAFEALGPERVTRGLKAPGHTWNDCFLALAMSGEVGVLGREMGRWRREHYVGTLLGVRVELVNEVVRTWDHDEAAFRALAAEWLELNRAAAATAAAVGT |
| Ga0215015_104667277 | F004205 | GGGGG | MKARVTSESQSFRLVERMEEVKISHGQELRADLLNVRVLALAGVAEVLALFCNIGPIRVREILNRGDDRPLPADVTLEGLEVPTSGTYDILNALVCSNGDLRLVVDDATRVVRPTNDVGATLV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |