Scaffold Ga0215015_10334351

Overview

Basic Information

• Taxon OID: 3300021046
• Scaffold ID: Ga0215015_10334351
• Source Dataset Name: Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Colorado
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4575
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us

Source Dataset Sampling Location

• Location Name: Huntingdon County, Pennsylvania, United States
• Coordinates
  • Lat. (^o): 40.6949
  • Long. (^o): -77.9199
  • Depth (m): .9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011479	Metagenome / Metatranscriptome	290	Y
F017116	Metagenome	242	Y
F020766	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0215015_103343516	F011479	AGG	VNDLSFDDFVSQSVNETMSKILGTDTWKAINFFFDMKIIAREPEQFAALLDKVFGYTSIVLQKKIGETLLGKVGAVQQTSSNFDFRQILRLAKAKFPRQAIPEALGQ
Ga0215015_103343517	F017116	AGGTGG	MAFNIETAFETFNLVLILVAFGIFARLALKGRSLGNFRFQLSIFLLIWVLSEIPHIVGTLGLIDTRSYTDTGLYLHAVSMGVFALFVGWRSLKIATLHPIPPTGAVSIPTKPPKVLEG
Ga0215015_103343518	F020766	AGG	VDLVTGGIVLFSIMVAAGIVPLIMAFRVKVHSLRILSLLLGLFAIIHGFYHLASGFQQEFLADVVIEPISLLLLVGLGAYYSKVAIT