Scaffold Ga0215015

Basic Information
Taxon OID	3300021046 Open in IMG/M
Scaffold ID	Ga0215015_10214907 Open in IMG/M
Source Dataset Name	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Colorado
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021046 Open in IMG/M

Scaffold ID

Ga0215015_10214907 Open in IMG/M

Source Dataset Name

Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Colorado

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28792
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (75.76%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

28792

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (75.76%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us

Source Dataset Sampling Location
Location Name	Huntingdon County, Pennsylvania, United States
Coordinates	Lat. (^o)	40.6949	Long. (^o)	-77.9199	Alt. (m)	Depth (m)	.9
Location on Map

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Source Dataset Sampling Location

Location Name

Huntingdon County, Pennsylvania, United States

Coordinates

Lat. (^o)

40.6949

Long. (^o)

-77.9199

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000696	Metagenome / Metatranscriptome	931	Y
F014050	Metagenome / Metatranscriptome	266	Y
F047834	Metagenome	149	Y
F072549	Metagenome	121	Y
F094262	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0215015_1021490715	F072549	AGGA	MTENITDWLARVRQGMRSRYVRLLEAQVARERAEIERLRAENRALLNSLLGTAGVPPIEAPPAHPAQIAPIRRRSWQQIFAAREIEAEREARAREQSAQRQPGD
Ga0215015_1021490722	F094262	GGAGG	MPAYNNSSSPSAIWPGDFAQVWNAEQPAPGSGGASASQRVALGTKEGGPGGFSVTGFFSGAPGSFEIDVQVSDVDADAQYQTCANGNITTVDATNNTFHLDASGVLATFVRLLMRSRTNAVNVTADIRRL
Ga0215015_102149073	F000696	AGGAG	MPTAYNTAGQVTSLVRSLLNDAAGNLFTDTVLIPYANSAYRKVQRALANIRSGSFLSDDVLLVVPAVAGADPSVQVSVTDATAPPNQLPVDLLVPLKLWERRNGSSDDFVEMTDLSDHGGLPSQPQGLNLQYWEWRTDGLYFLGATQDTQIRLRYEKAYPAFVDGTSSVLIRDAIESIAYFTAAMAAAARGAPQAARWDDAGSDALEDLLVRATHREQHSGHRRRPYSWRQGYGPIV
Ga0215015_102149074	F014050	N/A	VRILRTVVTHSLELWAKGLLAAAIAGAANGVITGFAAVGIDPAHFNLQAGLKSTLAIAGVSALMSGMIGVAAYLKQSPLPANNQRE
Ga0215015_102149076	F047834	GGA	VPSILNRETSFREGTPFSGSTISPRAQIKVIREQHAAPESVIRRLEIAGGRNRFGEANYRAVWGWSRLAWVGGKWEDRNAAGELVRECVELRRVPKYAPHNRWHIERWLPPEAYGSPRAWYAQTIEREDGVSVPALGPYPERGEYEHCFTLEGPRGEFVQLTPAVAEYIACAIEAGRHTSAAERRKAIEQRERRSERDYDRWAWDVLDSGCPAFHGVPFVNVL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0215015_10214907

Overview

Ecosystem & Geography

Associated Families

Sequences