Scaffold Ga0215015_10078252

Overview

Basic Information

• Taxon OID: 3300021046
• Scaffold ID: Ga0215015_10078252
• Source Dataset Name: Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Colorado
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4258
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_40CM_2_52_4 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us

Source Dataset Sampling Location

• Location Name: Huntingdon County, Pennsylvania, United States
• Coordinates
  • Lat. (^o): 40.6949
  • Long. (^o): -77.9199
  • Depth (m): .9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013287	Metagenome / Metatranscriptome	272	N
F030030	Metagenome / Metatranscriptome	186	Y
F042845	Metagenome / Metatranscriptome	157	Y
F046962	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0215015_100782523	F013287	GGAG	MGLSVKPVTLRGATYLRVPGDVAELLRVMASKICSVNFRIDEKECTLTYSFAKSVPDLREEPSDPRLLLAE
Ga0215015_100782526	F046962	GGA	MEEMANSGYPPETTNRTIPQDTMTNDQLRNILAELISSSASLNVRVWLDGVYTDIENAGAHREWMKGREVYFKVEGKVDGQNSLEEEPLRSV
Ga0215015_100782527	F042845	AGGAG	MATRKWKAFLRMNGETVVDSSPDILTEFKAMVEYLNSIGVDYSIVVRVEADQAEHSQTLTMEQPPRRLVTGQTGD
Ga0215015_100782528	F030030	AGGAG	MTKFIMSIGDSAYDILSNEAKNRDVTVQQLLRAVVVPDWIRQNAIGDPPIENRSHRVQSSVYGADPSNSRMLVSPVARLRG