NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214108_11299085

Scaffold Ga0214108_11299085


Overview

Basic Information
Taxon OID3300020815 Open in IMG/M
Scaffold IDGa0214108_11299085 Open in IMG/M
Source Dataset NameFood waste microbial community from Durham, Ontario, Canada - FW2 megahit
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Toronto
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1530
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location NameDurham, Ontario, Canada
CoordinatesLat. (o)43.6629Long. (o)-79.3957Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032187Metagenome / Metatranscriptome180Y
F039981Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0214108_112990851F039981N/AAQFYAQKLKYPKGALIFNGSGEEDFLYCLPDSKEISVCREMSKSFRFPTLEDGLSVLSKDELADSLAYNSIKV
Ga0214108_112990853F032187N/ALFTLCNIAALSPPSEPAEPSAVPHAKGDDEIRKMAEAIMDKVVDQLLNEAAEIVLRED

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