NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181598_1041261

Scaffold Ga0181598_1041261


Overview

Basic Information
Taxon OID3300020810 Open in IMG/M
Scaffold IDGa0181598_1041261 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041404US metaG (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2348
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093806Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0181598_10412612F093806N/AMFEISWIQNDARIIQRQLPRALGFGEFLVSIAIKDLLYCIAYNEDSQLSNLDFFGPLHLEVRFDNGIESVIYSSLNQKTLFNPGSFAIGSDAHSFCSFYTAHLVLWESKRFYEREKLRDGGPLYELFYWRFMTDKGMHVNMLYDRVYSFRSYIGSFIEVKDNPTEYMDIEEEFKRSLTTKRFYAEQPQFFQVLVNPIDGMNAFSKKHNCCAICNTKIKQELEYGYCISCAREYLLPFSEKTTGPIDYDGLRKSELVDKYDFYSGNDLEYWVTPNGELGSRNPHLPF

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