Scaffold Ga0181598_1024003

Overview

Basic Information

• Taxon OID: 3300020810
• Scaffold ID: Ga0181598_1024003
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041404US metaG (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3463
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062275	Metagenome / Metatranscriptome	131	N
F076607	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181598_102400311	F076607	N/A	ILEDIEKLHFDYAECKIEMEEFIAGITRLGVDSPADIEEHRLNAEEARYEYKVSQHQNKF
Ga0181598_10240037	F062275	AGGA	MIAHTIDLVGEFKALPTNHEKWWEEYKKGEKFALLIKKKNALPLKEIYKKMYEDGIHYLQLHFEGGHDEGGFDGDFVFLDKDKNPMTIKDLSKYSPTGWIDEYTPLEYTIDKGKDKITQVFEYRNTNYSDVKVTQDWLVNKWYEFGFLEEWGTFAFEGNVYGEVIVSTKDGSYNVDANETFESYESKDFEGKMFDD