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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020810 Open in IMG/M |
| Scaffold ID | Ga0181598_1023692 Open in IMG/M |
| Source Dataset Name | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041404US metaG (spades assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3497 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Micromonas pusilla virus 12T | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 31.972 | Long. (o) | -81.028 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014254 | Metagenome / Metatranscriptome | 264 | N |
| F077250 | Metagenome / Metatranscriptome | 117 | N |
| F079813 | Metagenome / Metatranscriptome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181598_10236921 | F077250 | N/A | YFIAFLFALVFLISYKPGSGTLQKWFGVKEGMHHEMMEAPEVMAPSYKVTSRDEINAREMNNIFGIQR |
| Ga0181598_10236925 | F014254 | N/A | MSFKKECEQMGWWFRSKPEGVPITHTLMDGSGVLVVPLQQRARFYEICMQCLSKREKLFMVEQTKSSDRFRMFLDVDYLTTEEQGAVTDETIKRWAMHLYEAFPSLGPVLVSTCTRKQDRNYKNGIHLSWPQVTVTYGSAMNIYKRVMMEMKNFDDSVQWDSVLDKSVFKTGLRTIWAWKIKRDSKEMVVPYVPRFEVNKDGLTEIPQSKPTASMLERFSILPHGNEPNHFAGDDTIISGASVDDEFVTWIKQVYPKHNISKVEKVIPKKTHWVITTACKYCEFIGKEHQSNHIWFLVDKESQTIMSKCHDEDHKGLSGRKLMVHPKIIKYLQKLNKV |
| Ga0181598_10236929 | F079813 | AGTAG | MDGFNTIASIAFGMLAAWAILEQRESYVPLHTDPGDDPSKYYASPMEV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |