NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181598_1003619

Scaffold Ga0181598_1003619


Overview

Basic Information
Taxon OID3300020810 Open in IMG/M
Scaffold IDGa0181598_1003619 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041404US metaG (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13258
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (74.07%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046235Metagenome / Metatranscriptome151N
F065746Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0181598_100361913F065746AGGAGMKEPYVSLFNYVDNWKKSIHFGYADSIKSAYGEDLSIFFGPEEERTPIKFLEPEDYQRKLSLIKRATIPNLNVSKGALNLESMGTVDFITAFKMALDAMHSIIDPVTGKPVLYGVQLQAYNLEEAVMNGLAVDQSLVAMNMKAQRVIYLWRMFEIAMNFDSSLVFGAKGRYAADEERVFLNDGMQGSMALALHGVKTLIVGFSMKDMPYIDFNQFLACNADVVPITDYDFVKVRNNRAMSMLTAGLDVKLEDQPAYNLSKVLSDVNITLVPESATPGAGETKHTAHLQKHFKEFCKDSYSNRFAFQMALKCVRNAWHFSAIDHAPVWGLTELFTQMPKKSVTDDLLIKIGQVMSERWSSSSKVWTDVLKAIRLQYPEKTKSGKYTEWKDHRFTSGSNRGLMIAAAIKSLIDNREAHIQSQPGKQKGYDLKLPVVEKGGANFTIDMPYVYTDTNGKVAEYTSIIDVDSFNNKAQKHEDDKFAEFM
Ga0181598_10036198F046235N/AMTEVVHYDWSNLIDEEAKRLMCNDINNVIAEGNFWKNSPPYQTNINIFGLPHEHWNNLKMSFIWSCFAYLGREAQIKSIKSWGYKTNLTTQEDRDTYWHQHIREASTTISGVFYLNKPSEDDDVSTLGTEIAPNGVEGEGKYFAEMRVGNWIIFPGKTWHRPGILTSNNYRYIVAADMEI
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Institute for Fundamental Biomedical Research
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