Scaffold Ga0214219_1000590

Overview

Basic Information

• Taxon OID: 3300020735
• Scaffold ID: Ga0214219_1000590
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 25JUL2007 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 13907
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (59.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007166	Metagenome / Metatranscriptome	356	Y
F010592	Metagenome	301	Y
F068376	Metagenome	124	N
F069612	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214219_100059014	F068376	GGAG	MTNFKIEGKTHESPKGHYVKESPHKLEDEIHRLAKKLDKHIALPMEKAHHAESGSSQKEAPLPNMQKY
Ga0214219_100059015	F010592	N/A	MASGGMSTYKPFSQDLHDVYDAPARQAVSTWMQMKKGYEVRENPNRYGVDLICFRSGSPVGALEVEVRQLGFDQHRSIHVAQRKEKLFQEGLPTLFFALTQDLHRAYYLKADLIKDCPLVEVHNRYVGKGEMFYDVPITLFKIANLTDVF
Ga0214219_100059021	F069612	N/A	MMGACKLNPVVVNKMPQDWCGQEIPKEYEEPGITITVAPKATIVAQETTYDINTDAVKPKRGRKKNVNSDL
Ga0214219_100059025	F007166	GGA	MDELYQVMTEMEQRLEIALDNMEYGTELSQDNVDVIRAACGKPNNKRNNLLQSVFEDFGKVFGGSNV