Scaffold Ga0214219

Basic Information
Taxon OID	3300020735 Open in IMG/M
Scaffold ID	Ga0214219_1000441 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 25JUL2007 hypolimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300020735 Open in IMG/M

Scaffold ID

Ga0214219_1000441 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - 25JUL2007 hypolimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	17499
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

17499

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (80.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F010759	Metagenome	299	Y
F017591	Metagenome	239	Y
F086513	Metagenome	110	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0214219_100044112	F086513	AGGA	MKKLTPQTAANPWDNTGPATQHTDAEKAPPQGAISPPKQNQKESKTDTSEPLYDLEGLMTDFPTAKDLEKFVFDQTGLVLNLKGRSNKFKYQTAMDVLNGAKPENYLLGSENPYLDKNDIVPVDELKSLPPRPPEVVGVPHVASFISKQFPHPDPDFKSQGQMCEVVFRKYMNNAITYEIIGPLAPRAVGVRVNKFGKEVPEKYTWVDPRTGEQLIRDSAGRYTPIGTRLRASMQKRKINKSDYWTMWIDRDFVMTSDMVNSDDPWLS
Ga0214219_10004414	F017591	AGGA	MSNLLPINTGDDLVQYVLQFTGSNNTTEIQQCVYLTEMMLRNIELPALRTNPWTTIGTANQYGQVPIPADMNRPILFFNQGSGGTSPNANGAGPWIVYDRIGDRDIITETLNQNLYLAPWNTPQVYRGKFSEVGQYYEFLPTLSAGAQINMYYFTTWPLLFTIDNNNNQVQTNVVLSSFPEGYVYGTLHNYYLKRKMAEDAANWRAKFDDAMNTVEDQNNKGKWSGGHNKLTSVFQPRKDQRFGTR
Ga0214219_10004415	F010759	N/A	MNNEFANYQDKSYLDDTDPEFNADAHSQSGGGLITADNGIADRLLQNDKLYQHIKAGGETVGWNGSKNIKTTTRRDGDKFLIHREQFNVEYIAEQCSEYRKRAEAGFIDPLAPLMPDGKIGYKWMELPEVIAIDIGNKYFGGLPWAAIKRDRTLKAQFYRVVETEYPAFVCYPGGKLPIPVAVPYPTPMGAERFFKGHQFNE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214219_1000441

Overview

Ecosystem & Geography

Associated Families

Sequences