Scaffold Ga0214172_1007396

Overview

Basic Information

• Taxon OID: 3300020733
• Scaffold ID: Ga0214172_1007396
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 12JUL2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2286
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009462	Metagenome / Metatranscriptome	317	Y
F026556	Metagenome / Metatranscriptome	197	Y
F043403	Metagenome / Metatranscriptome	156	Y
F063276	Metagenome	129	Y
F070810	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214172_10073962	F063276	AGGA	MSDSSFRQNLDFFMVMLLGLAGLVFAIYWNYTHPHLVVKYDCSIAEISPDYPVQVKEGCRKLRARNN
Ga0214172_10073963	F070810	AGG	METSNKVYEVRIPWENQKEYWWNELCADIVEVFGLPGGRYTSHPYSDYMLFYFKSKKDFHLCQILVSDKI
Ga0214172_10073965	F026556	GGAGG	MTSAIIKLMFGIALILIALIFGPIVGIWSLNTLFPTLAIPYTWQTWLAFNCLFGGSIATRLKK
Ga0214172_10073967	F009462	N/A	MLWENTEHLKQLKEMKMELHESVRDTYTETVIKEHEGFRLVLKKHEVLNPKGLFSVDMEQQSLKDGVVQDTAVYNFFMTRDEMATLASALTA
Ga0214172_10073968	F043403	N/A	GTNTTWTTGTSVANPYDAVMKINQTSPPTIEVKGNMVINGRDLEERLETIEKVLNIPERDVILERKHPKLKELYDAYINALGKYRTFEAIKGDENGTT