Scaffold Ga0214172_1000549

Overview

Basic Information

• Taxon OID: 3300020733
• Scaffold ID: Ga0214172_1000549
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 12JUL2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 15299
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093167	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214172_100054910	F093167	AGTAGG	MPTFTPPKVKDNPPILPDSKGLERRLWRYFPNRPRYVLVFKLSDGTFVQDTATPENSNTNIPYPYNPWNPEAPYSTSYFVNYEVNPPVPTSVTVSQNPYVVKVYMNVCQVTTAEATALTNAGYGALIS