Scaffold Ga0214172_1000288

Overview

Basic Information

• Taxon OID: 3300020733
• Scaffold ID: Ga0214172_1000288
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 12JUL2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 25528
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (78.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038015	Metagenome	166	Y
F050052	Metagenome	145	N
F079517	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214172_100028826	F079517	GAGG	MSIPVINVAPNLPLPSSEYDQHYLDNLTKVLRLYFSSNDNVNQVISNQVSTNQALIWLGV
Ga0214172_100028829	F038015	AGG	MLSWLSWFVDDLFYWIAVIALVGGAVAYVLSYLVGFLPMLKPHAFVMKVVGLSLVVLGGYYVADHRGYERRVAEDKAEIERLNGEARAKEAELNTKLARATSQLKKAKDDIQTKQAGINARIDSGELRLPTTCGVQADPSAPAGDGAAGAESERQAIKDIVQIAADGDSAIVSYNSCIARYNQVMETVNEGVK
Ga0214172_10002883	F050052	GGA	MIYTTFKQWVKGRFLEIGEPRIKAYSKDERALIEMGWGYGYDAGVMVEREQCAQIADEWVLAYPHPSKTIAETIRARGQE