Scaffold Ga0214172_1000272

Overview

Basic Information

• Taxon OID: 3300020733
• Scaffold ID: Ga0214172_1000272
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 12JUL2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 26377
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (47.06%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F007405	Metagenome	351	Y
F017785	Metagenome	238	Y
F026565	Metagenome / Metatranscriptome	197	Y
F067746	Metagenome / Metatranscriptome	125	Y
F086266	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214172_100027215	F000934	AGTAG	MADLTTILAMSEQVTIMDQRLVGQSISRNQRISTSEILTVIPFQFTFKPNAYQLYSKNRNLLANLRYYDKSLEQYLNFGSTGWVNYIAYQGDMTPTEIAACQWETASAGKNLVLGNLPTIASTSYIVKAGDFCQIDRYAYIVTADVMRGSGITVTIPVHRTLLTTLVSPENAVIGQYGTTVALGGNNYTGTTFPVILQQYPTYNLIPMANDSFIQWSGPFKAFEAVL
Ga0214172_100027216	F017785	N/A	MSQNITPIQNTNNIRYADFVRIVTPTATYRFSTAPTSLTIPAIDSQPFDGLGQLVGIGKIQRDIKSTANQTTVTLIGIDTALLSVVLNGNLKGAQITMWKGFFNTQDQLITTGETGGLYQYFYGFINTFNIGEEWMEEARMYVGTVTVSAANIQMILQNRIVGRFTNDASWEYFTPGDTSMNRVATISTIYYAFGKQ
Ga0214172_100027217	F086266	GGA	MIRYANKFDFDAIYKILEHFCHTHRFEILKDEAKWSRGYVGKQLSMILAGAGFILIAEDLSGVLVAMKAPCFFIEGEYSLHEIMWHSTNDKTSLKLFKKFIEIGREMKKIGEIKEAHFSCFTDSDFSRYGATKLQNTWKI
Ga0214172_100027222	F007405	N/A	MVTPSTLAHSFTYDGAQLNVYHADKGQGLPSHSHSYSHATMCNAGSCLISLEGRSYTINKNSQPLNLPAGEWHEIEALEDGTVFVNVFAEGKY
Ga0214172_100027223	F026565	GGAG	MAVFNQNTLTQVSGFDNPIIAGELVWDQSTYWNLRITANDGVTPIDLSDATIDAQIIRREVSNIQDTRTGLSFDIANYNPAPTPIPLTITNIDNATGFFTLVINDTVWGLMADDPELDIDAQNCVGFSGRIKVSFAATGSTPQNDYIIFLLFLVRSDGIVVE
Ga0214172_100027228	F067746	GAG	MSNITETEARLNSHEAVCAIRYESINARLKRLEQILIACAGFIIVTLISLKWH