Scaffold Ga0214172_1000124

Overview

Basic Information

• Taxon OID: 3300020733
• Scaffold ID: Ga0214172_1000124
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 12JUL2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 42032
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (84.13%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021233	Metagenome	219	Y
F037028	Metagenome	168	Y
F053744	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214172_10001243	F021233	GAGG	MPEPELEPTHDHRFNKLHEFAIRAFRWEGKPEEQNMLESIEELVEGFLKDYIHPAEVIIARFNSDSSLQGAEADRLFLNLQSAIVSIEEEVTRRYLRAQYSYYMLDDKYWEAYRKPAKGTVNDLEARARTETREERYFYFVQYAAWRIINDKVQSLKATQRHIQNQIYRRG
Ga0214172_100012431	F037028	GAGG	MEEKTFSGTPANYDDDDYDSFIEYTPVESKQELINEINLETASPRELLIYFAERYKQIHGFEHVVDWVKEIAIFKSFIERYNKDAGPMVALLFDKHKGKINDMVMTPTAFSKGSKWIQDTLYIELQQNKIKEESKTSSEGLMNTDEFIKRFAI
Ga0214172_100012435	F053744	N/A	MAAWVPFKDDDQRFTVAMAAAFFDLNPSAFRKKEKFLYDKKGEKIEIGRNGTHRSYSLNDILRIAHALRRADKMTDRQLKLIVLRVDAFKEPVKKHRKKFRKGIKRDD