NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214172_1000018

Scaffold Ga0214172_1000018


Overview

Basic Information
Taxon OID3300020733 Open in IMG/M
Scaffold IDGa0214172_1000018 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 12JUL2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)102036
Total Scaffold Genes158 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)133 (84.18%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012969Metagenome / Metatranscriptome275Y
F025983Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0214172_1000018143F025983AGGAMPNLNKALNDGATDGKYRKVRPNTKIAKGMGEELVAANRRGLHPYWNYDFIDQEAPAMVNPVSLKKTSAARSPMNVADVSNNQMLGTN
Ga0214172_100001830F012969AGTAGMRGGDISNEVPLRVLVAIDCIIERRPTLKKVFGINITGEEVTYNRQSLAYFWRFADKQGYTLELVGFERTQKEMDRVLQDLDNLGTNPFNYATAYNVVADLVVELPYRPEVRGVIDIPERGLRYGSWYLDSGVTNGVGQ

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