NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214201_1014341

Scaffold Ga0214201_1014341


Overview

Basic Information
Taxon OID3300020732 Open in IMG/M
Scaffold IDGa0214201_1014341 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1571
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019779Metagenome / Metatranscriptome227N
F031758Metagenome / Metatranscriptome181N
F043229Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0214201_10143411F043229N/AIEECGCEPHECYCRHNKEYKKSIKIRNLTTMIGLIEADAPLSFRALERICDLKKKIKRIDPEWILVNEVKLLEHQVLSQLDTIDHTIPWNSARNKLRYIELCQSINKLKIIHPDWEMDLEDSKNHYICKCCSCLEKRKIHQQTLDETRSEKSTPYEGSRNKFSN
Ga0214201_10143412F031758N/AMSANKSQEKELLIKNLFKLINEIFIVKPGVTFDEIILQVRNTKKRILEIDPNWKLGNKYFHYVHKVISLIDEVNTLDEINLEKQRKTFRKILKTTKTLRQTDQLWRMNPTIILNFLECNSKIVMSAGQISKKPREQVPLDQVNK
Ga0214201_10143413F019779N/AMKDHPTIDFIPKDVEGEEDRFSETLDSPDIENEIECSDERCFTPPEDDWEIIGRGSDFIIHGLETLDEQLDIIATRIDTENKIEEILINIRKGFAIIDDIILYTTTFINEANKAKVEKFRGFISDLLDFAKTNITKTLVIVRKLRARSLLSLIPLTKDLIMEQKHVKKLVSSSNLEQVKELLKEYRCTIRRRVSRRYS
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