Scaffold Ga0214201_1009840

Overview

Basic Information

• Taxon OID: 3300020732
• Scaffold ID: Ga0214201_1009840
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2069
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016243	Metagenome / Metatranscriptome	248	N
F022147	Metagenome / Metatranscriptome	215	N
F037570	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214201_10098401	F037570	GGA	MNIKKLDLLKIRNLKFRASQRQVIIDRILRQKDLEKDLWKVSIKTLIILAKIKFRCEELERISENLEQ
Ga0214201_10098402	F022147	GAG	MQHEKDEYIFQLVTRAVKEIDSSEICRKREIFKILAKSEVSLEMKQILAKSARVISELQHYTEEAYNVSQYILVHYFKIDDLIKKESYPLQEVITFHNKKCRILKSKDIVTLEKVSIANKLLIKTLSDETRSALKEQLALVSKVGSTFTNLSLMYTYIENNDSGLQLEAKNRQWSNEYQE
Ga0214201_10098403	F016243	N/A	MNEAQITKIVMRLATRSKWSIEVRRDKVSQMIAEEIQRSDELNQALMELDILLDKLQKVYQEVDDVCEHLLKHYLKSEYIQMHRPSFLNTNTIKDSKAEFIQRLLEVSDSRESLKIQDSEITTHSIYHKIDPGLRIALNNNIVTLLTIDNELIDLKVIYKFLIENCENE