NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214201_1001839

Scaffold Ga0214201_1001839


Overview

Basic Information
Taxon OID3300020732 Open in IMG/M
Scaffold IDGa0214201_1001839 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)6163
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016117Metagenome / Metatranscriptome249N
F021046Metagenome / Metatranscriptome220N
F073067Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0214201_10018395F021046N/AMETNFVTNVHELVYASFLSKECPVNEVRILSKFYKVSLVVFKAGNVSYNATMMANTIITDFFVKHHRFFAREIGLEFVANILTLLYSYDGFWDLINRLNIHLFYLSYRSQILQILIYHMAMILGSESYHQVFSRLPPFVSGAEDFSEERGNS
Ga0214201_10018396F073067N/AMEPAVKTPLTPTQPGVNEQVHRVDHLPRSDEVIVPEHLPGVELLAAGACINPCLERTGIFGESLTLRFL
Ga0214201_10018398F016117N/AMDCSIAIDLSPRLSLLIAAWRSFFKKLHSRNLLTDNGLQYLLAVLVDKLQEALDSEFHPLVLTWLKETLPKLIKCRGTLNLVNQIPAALWTEDYNFRCNYIRCLERRSNRLSSTS
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