NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214170_1020108

Scaffold Ga0214170_1020108


Overview

Basic Information
Taxon OID3300020731 Open in IMG/M
Scaffold IDGa0214170_1020108 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1157
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009462Metagenome / Metatranscriptome317Y
F025277Metagenome / Metatranscriptome202Y
F026556Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0214170_10201081F026556GGAGGMSLTGSLIKLAIGIAFILIAIAIGPIIGIWALNTLFPQYLNIPLTWQTWLAFNILFGGSYARLKK
Ga0214170_10201083F009462AGGAGMELHESVRDTYTEQIIKEHEGFRLVLKKHEVLSPKGLFSVDMVQESLKDGEVVDSQTYNFFMTKDEMSTLASALTA
Ga0214170_10201084F025277N/ALEVKGNMVINGRDLEERLETIEKVLNIPERDVTLEAKHPKLKKMYDDYIKELSKYRMWETIKGENDGTT
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