Scaffold Ga0214170_1015347

Overview

Basic Information

• Taxon OID: 3300020731
• Scaffold ID: Ga0214170_1015347
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1399
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009462	Metagenome / Metatranscriptome	317	Y
F025277	Metagenome / Metatranscriptome	202	Y
F026556	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214170_10153471	F026556	GGAGG	MTSLTGSVVKLIFAIALIVIAVAFGPIIGIWALNTLFPQYLNIQLTWQTWLAFNILFGGSSILKLGTNK
Ga0214170_10153474	F009462	AGGAG	MELHESVRDTYKEMVIKEHPGFRLTLKKHEVLSPKGLFSIDMVQESLKDGDVVDSQVYNFFMTKEECQALAYGLTA
Ga0214170_10153475	F025277	N/A	TSPPTIEVKGNMVINGRDLEERLNTIEKVLNIPERDVILERKHPKLKELYDQYINALGKYRTFEAIKGEEDGTT