Scaffold Ga0214170_1011432

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0214170_1011432

Scaffold Ga0214170_1011432

Overview

Basic Information
Taxon OID	3300020731 Open in IMG/M
Scaffold ID	Ga0214170_1011432 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1729
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042065	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214170_10114324	F042065	AGG	MWSTVEEFRDWYMGNGMPIRPPFKNPVFATDNAMSLCLFREGRFQVEMYISEPNSTSPPHTHPGVESAFVYLAGNIQFNLEGRDNPDVQQWQVASPDGYHSLLGKTVSSPDGIPHWLGIGPEGGAFLSFEYWKDKDPVSVTVNWDGETVGSEHDKTIGKVKGESNEQTAGSV

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