Scaffold Ga0214170_1008470

Overview

Basic Information

• Taxon OID: 3300020731
• Scaffold ID: Ga0214170_1008470
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2122
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058734	Metagenome / Metatranscriptome	134	Y
F063402	Metagenome / Metatranscriptome	129	Y
F091108	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214170_10084703	F063402	GGAG	MNNISNVIVRDINIRTLGDESVEQRLAAVRRRINTTKYNILGFINRSSQLVLEPRFYNVRDAKGRFAKVFKQPYKAKNHR
Ga0214170_10084705	F058734	N/A	MQLTIIGNVSELSANEQKALYSDGADITTGMYYLVADAKDFALQGREVIPNLPALRSLSASANISWVVTNFRGNRVAFGSATAA
Ga0214170_10084706	F091108	AGG	MNKAFLRRQAASKWKDLQCGIWERWDYRCCYLVIRQLDNGKFKPMIGAMGDLSMPGADLPPEGYHQLDTLDEAKNFLHKYVAYIREVWDKQVIEGRK