NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214170_1004016

Scaffold Ga0214170_1004016


Overview

Basic Information
Taxon OID3300020731 Open in IMG/M
Scaffold IDGa0214170_1004016 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3486
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012647Metagenome / Metatranscriptome278N
F015058Metagenome / Metatranscriptome257N
F015181Metagenome / Metatranscriptome256N
F053818Metagenome / Metatranscriptome140N
F082118Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0214170_10040161F012647N/AMEEDRAQEHLIFYINEFYAIKNITMDLFLLFRKSEAEIIKGKEAIEFRIRGRISFLTHSMRDRTSLGADYALASIKHWTNLLKICQKEQTQALRMLDDLYQTYKRVSRVPISQSIPVKEHAERMDTNDNN
Ga0214170_10040163F082118N/AMLAQKSQRILELEAQQVELRQNQLNVVAQLQERNIDPEEEALLKEQLELLSKLEVPIYMLLDRYKGKERKEKRKRTSRRQTIRAI
Ga0214170_10040165F015181N/AMNQTLLSKEDVMILDLLERVKKKENTLIEESKKQDFIREIQLENFSSEKRRFLVKLLVQNTELKLACKEEKGIANYVTEKFFHTKTLDISDEQLLQQEIVTFQQKLGRIAQLKEKIKIDKGEIANELFKTKTSERMSVILKELSTLLYETNIRLSNSGLMYNYIISKLFKLVDNGKPAYQAEAMDWTTTYKEK
Ga0214170_10040166F015058N/AMDDSWIYTLNNDIMRKDRERLKGQGIVISNLISEGQNKTDKEKKYLKILEFMNSIEVLVHFAEQALIWTTRSQLRPGTQIPADAVKTLTYNDHESLKQKLGTIAVARASILKRKGSMQFHSLSESGNNPVDLYETEKTIVLMKLEARLLQLEHLYKSLLEIKPVELKMFQ
Ga0214170_10040167F053818N/ALHTPQEEIEKLFVKQLVTLTKLDCKCQFVEQILAAVIRLKENSSFPIQREAVNLARVLLTGDNESVVSKSRVVTDLLQSLKETIIQMEKVCKGSKATKEVKELAIESIVVLNSTEARLGYLKHLYEKIIEKTSLVIVGT
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