Scaffold Ga0214170_1002488

Overview

Basic Information

• Taxon OID: 3300020731
• Scaffold ID: Ga0214170_1002488
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4683
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058685	Metagenome / Metatranscriptome	134	Y
F059665	Metagenome / Metatranscriptome	133	N
F075668	Metagenome / Metatranscriptome	118	N
F104447	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214170_100248810	F059665	N/A	MSEEKENSKPKFSVRNRIRPSRGRWSDNDLLLFVQSLINSVNTEENFQVNLSVMEELFEAIKDFRERRPNWYFILEKIPASSREDIGND
Ga0214170_100248811	F075668	N/A	MSYEYSVNDVRCLVMYTLNKVDTQKDFCENLRVFSGLYIAIMAFKIYEPNKQFELEKGPLPYERNHSSFYNSKGSKSRRKINRLNQFYE
Ga0214170_100248812	F104447	N/A	CDIINSIAVKKDFDSNARQYVRIHEILQEVKTINPDWRLTACAKYSWK
Ga0214170_10024889	F058685	AGGA	MMGRELKSYPCARFNCNQMIKKNRPKRKILLNPGVKSVRALIKNKCITRLAKQRSMIKNKKLNLLIKPCTTSRKSNSNHPNGSSINKRVVVNYPFIPVKLHFLSKKSREWIKLASPMKAIKPSIPAKPNILINKNVLANQITYLISLASYNMKVKSFIPDKLSVLINNSTLGDQITQSKVNYPFIPVEYIATNKKSNIMEEKSILRIDRNTPVGAYLFQKKDLKMSYYSHCSSRRSLLNGKV