Scaffold Ga0214170_1001797

Overview

Basic Information

• Taxon OID: 3300020731
• Scaffold ID: Ga0214170_1001797
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5794
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048757	Metagenome	147	N
F067259	Metagenome	126	Y
F083483	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214170_100179712	F048757	GGAG	VNLKQLLKSAGVSNDIIKEVERKAARTTAEQELEHQEKAAAMAKMMLNDVLPHLRKAMETPVPSKPKRTIIIDDK
Ga0214170_100179714	F067259	N/A	MKKYTAGDLEQAIMMCWQTSEDLELFFRYHGDAPTPMTEDEVANALLGIKLLNDMRIWNAEDVHARVFGLNQYCTDPEKLAAREYFFKPKKGSKK
Ga0214170_10017972	F083483	GAG	MVKKKKKYNYYKLDVGFYPDVMKLCFDNSVFQQILKDHDVTLKASALDTGVAETHQIGDGKDGIIILVFNIEEIGDELSDIADTISHEVSHAIDHLAEYIGEEDNFVNETRAYLTGHLVKQIFKIYFHEKEKHARKANRIKTKQDGERTRRNEPEVYINRDGGAGSHSPAELDAILRGVEDDDRKDKQTPRNSV