Scaffold Ga0214170_1001621

Overview

Basic Information

• Taxon OID: 3300020731
• Scaffold ID: Ga0214170_1001621
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6179
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026474	Metagenome / Metatranscriptome	197	Y
F053696	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214170_10016214	F026474	AGGA	MVARDVLSTVLTDAIANGKAKLAGNMDGLNDVVNIVLAAYSGVNLIHLGWQGWLGIIPIGIVGKITTERATKWSHKNIKEEN
Ga0214170_10016216	F053696	GGA	MAYVDSVDEDGTIWVIQMARRCERVKLQDVAPKGHVKIITCPPEVNREMASAYATRQLGTKYGVLTIISIAVNLFMPNPLRLDIRKEDTLICSALVARAWEHGGWNCPVDPFQVTPAEFDGLLGGGGVRVY