Scaffold Ga0214170_1000625

Overview

Basic Information

• Taxon OID: 3300020731
• Scaffold ID: Ga0214170_1000625
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 11576
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (78.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007166	Metagenome / Metatranscriptome	356	Y
F054520	Metagenome	139	N
F069612	Metagenome	123	N
F074308	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214170_100062514	F054520	AGGGGG	MLEKTIIAATGLGYLMVGVLQLRKGSIPNAMIWLGYSFAQVGLWMALK
Ga0214170_100062519	F007166	GGA	MDELYQVMTEMEQRLELALDNMEYGTELSQDDVDVIRAACGKPNNKRNNLLQSVFEDFGKVFGGQNAPV
Ga0214170_100062523	F069612	AGGA	MTCQVCKFFVFNQNDMMGACKLNPIVVNKLPQDWCGQEMPTEYEAVVVPAHQAEVLPDTAPIVEVVYDINTDEVKPKRGRRKNVNSDL
Ga0214170_10006257	F074308	AGGA	MGKMDSSKGIPLSTGDKLPKGADASDTSGERKVKLVGGVGMGKMDAMGSRPLSHAGNFEGKLGELNDGNMGERECYSHKRVGHDQDDM